Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-138/megassr/results/hub_GCF_053847265.1/fasta/hub_GCF_053847265.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              235
Total size of examined sequences (bp):           6647668
Total number of identified SSRs:                 71
Number of SSR containing sequences:              48
Number of sequences containing more than 1 SSR:  17
Number of SSRs present in compound formation:    5


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	20
2	1
3	10
4	1
5	11
6	28

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-							1																																																																																													1
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	1	1	1	1						1																																																								1																1																1	12
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1						1		1		1				2	1																																																																																				7
GC	-	-	-	1																																																																																																																	1
AGA	-	-	1																																																																																																																		1
CAC	-	-	1																																																																																																																		1
CCG	-	-	1																																																																																																																		1
CGC	-	-	2																																																																																																																		2
CGG	-	-	1																																																																																																																		1
GCG	-	-	2																																																																																																																		2
GTG	-	-	1	1																																																																																																																	2
GCCA	-	1																																																																																																																			1
CGCCG	2																																																																																																																				2
CGCGC	1																																																																																																																				1
CTCGC	1																																																																																																																				1
GCGCG	1																																																																																																																				1
GCGGC	3																																																																																																																				3
GGCGC	1																																																																																																																				1
GGTGG	1																																																																																																																				1
TGCGC	1																																																																																																																				1
AAGGCC	1																																																																																																																				1
ACCGCC	1																																																																																																																				1
AGCGCC	1																																																																																																																				1
CAACGC			1																																																																																																																		1
CAGGAA	1																																																																																																																				1
CAGGCG	1																																																																																																																				1
CCAGCG	1																																																																																																																				1
CCCCTT	1																																																																																																																				1
CCGAGC		1																																																																																																																			1
CCTCGG	1																																																																																																																				1
CCTGAC	1																																																																																																																				1
CGCCAC	1																																																																																																																				1
CGCCCT	1																																																																																																																				1
CGCCGA	1																																																																																																																				1
CGCTGG	1																																																																																																																				1
CGCTGT	1																																																																																																																				1
CGGCGC	1																																																																																																																				1
CGTGAT			1																																																																																																																		1
CGTGTT		1																																																																																																																			1
CTGGCG	2																																																																																																																				2
GCCCTG	1																																																																																																																				1
GGCCAT	1																																																																																																																				1
GGCCCA	1																																																																																																																				1
GGCTCG										1																																																																																																											1
GGGACA	1																																																																																																																				1
TGCTGG		1																																																																																																																			1
TGGCTG			1																																																																																																																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-							1																																																																																													1
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5	1	1	1	1		1		1		2				2	1																																																			1																1																1	19
CG/CG	-	-	-	1																																																																																																																	1
AAG/CTT	-	-	1																																																																																																																		1
ACC/GGT	-	-	2	1																																																																																																																	3
CCG/CGG	-	-	6																																																																																																																		6
AGCC/CTGG	-	1																																																																																																																			1
ACCCC/GGGGT	1																																																																																																																				1
AGCGC/CGCTG	1																																																																																																																				1
AGGCG/CCTCG	1																																																																																																																				1
CCGCG/CGCGG	8																																																																																																																				8
AACACG/CGTGTT		1																																																																																																																			1
AACAGG/CCTGTT	1																																																																																																																				1
AACGCC/CGTTGG			1																																																																																																																		1
AAGGCC/CCTTGG	1																																																																																																																				1
AAGGGG/CCCCTT	1																																																																																																																				1
ACAGCC/CTGTGG			1																																																																																																																		1
ACAGCG/CGCTGT	1																																																																																																																				1
ACAGGG/CCCTGT	1																																																																																																																				1
ACCAGC/CTGGTG		1																																																																																																																			1
ACCCTG/AGGGTC	1																																																																																																																				1
ACCGCC/CGGTGG	2																																																																																																																				2
ACGATC/ATCGTG			1																																																																																																																		1
ACGCCG/CGGCGT	1																																																																																																																				1
AGCCCG/CGGGCT		1								1																																																																																																											2
AGCGCC/CGCTGG	5																																																																																																																				5
AGGCCC/CCTGGG	1																																																																																																																				1
AGGCCG/CCTCGG	1																																																																																																																				1
AGGCGC/CCTGCG	1																																																																																																																				1
AGGGCC/CCCTGG	1																																																																																																																				1
AGGGCG/CCCTCG	1																																																																																																																				1
ATGGCC/ATGGCC	1																																																																																																																				1
CCGGCG/CCGGCG	1																																																																																																																				1
