Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-114/megassr/results/hub_GCF_053764515.1/fasta/hub_GCF_053764515.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           3152159
Total number of identified SSRs:                 13
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	3
5	4
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	3	3
TA	-	-	-	1	1
TC	-	-	-	1	1
ATT	-	-		1	1
CTT	-	-	1		1
TCA	-	-	1		1
AAATT	1				1
AATAA	1				1
TAATT	1				1
TTTAT	1				1
AAGCAC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AG/CT	-	-	-	1	1
AT/AT	-	-	-	4	4
AAG/CTT	-	-	1		1
AAT/ATT	-	-		1	1
ATC/ATG	-	-	1		1
AAAAT/ATTTT	2				2
AAATT/AATTT	2				2
AAGCAC/CTTGTG	1				1
