Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-92/megassr/results/hub_GCF_053609335.1/fasta/hub_GCF_053609335.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              38
Total size of examined sequences (bp):           5696169
Total number of identified SSRs:                 29
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	2
3	3
4	2
5	5
6	16

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1	1
CG	-	-	-	1																	1
GC	-	-	-		1																1
GGT	-	-	2																		2
TCA	-	-	1																		1
GCCA	-	1																			1
TCCC	-		1																		1
CCCGG	1																				1
GCCGC	1																				1
GCGCG	1																				1
GGCGC	1																				1
TCCGG	1																				1
ATGGCC	1																				1
CCAGGC	2																				2
CCCTAC	1																				1
CCTGGC	1																				1
CCTTGA	1																				1
CGCCAT	1																				1
CTTTGA					1																1
GCCCTG	1																				1
GCGGGT	1																				1
GGCCAG	1																				1
GGCCTG	1																				1
GGGCCG	1																				1
GTGCCG		1																			1
TCTGCA	1																				1
TTGCCC	1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1	1
CG/CG	-	-	-	1	1																2
ACC/GGT	-	-	2																		2
ATC/ATG	-	-	1																		1
AGCC/CTGG	-	1																			1
AGGG/CCCT	-		1																		1
ACCGG/CCGGT	1																				1
CCCGG/CCGGG	1																				1
CCGCG/CGCGG	3																				3
AAAGTC/ACTTTG					1																1
AAGGGC/CCCTTG	1																				1
AAGGTC/ACCTTG	1																				1
ACCCCT/AGGGGT	1																				1
ACCCGC/CGGGTG	1																				1
ACCGGC/CCGGTG		1																			1
AGATGC/ATCTGC	1																				1
AGGCCC/CCTGGG	3																				3
AGGGCC/CCCTGG	3																				3
ATCGCC/ATGGCG	1																				1
ATGGCC/ATGGCC	1																				1
CCCCGG/CCGGGG	1																				1
