Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-90/megassr/results/hub_GCF_053232705.1/fasta/hub_GCF_053232705.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              558
Total size of examined sequences (bp):           5372951
Total number of identified SSRs:                 43
Number of SSR containing sequences:              29
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	6
3	18
5	8
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-											1																																																					1
CG	-	-	-	2	1																																																																												3
GC	-	-	-	1																																																																													1
GT	-	-	-	1																																																																													1
TG	-	-	-																																																																													1	1
ATC	-	-	1																																																																														1
CAG	-	-	1						1																																																																								2
CCA	-	-	1																																																																														1
CCG	-	-	2																																																																														2
CGC	-	-	2																																																																														2
CGG	-	-	4																																																																														4
CTG	-	-	1																																																																														1
GAC	-	-	1																																																																														1
GCA	-	-	1																																																																														1
GCC	-	-	1	1																																																																													2
GGC	-	-	1																																																																														1
AATAA	1																																																																																1
ATAAA	1																																																																																1
CCCGG	1																																																																																1
CGCGG	1																																																																																1
CGTGG	1																																																																																1
GCCGC	2																																																																																2
GCGCC	1																																																																																1
AAGAAC						1																																																																											1
ACAAGA																										1																																																							1
ACGCCG	1																																																																																1
CCAGCC	1																																																																																1
CCGGAG		1																																																																															1
CTGCTC		1																																																																															1
CTGGTG	1																																																																																1
GAAGTC	1																																																																																1
GACGAA	1																																																																																1
GTGGAA	1																																																																																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-											1																																																					1
AC/GT	-	-	-	1																																																																												1	2
CG/CG	-	-	-	3	1																																																																												4
ACC/GGT	-	-	1																																																																														1
ACG/CGT	-	-	1																																																																														1
AGC/CTG	-	-	3						1																																																																								4
ATC/ATG	-	-	1																																																																														1
CCG/CGG	-	-	10	1																																																																													11
AAAAT/ATTTT	2																																																																																2
ACGCC/CGTGG	1																																																																																1
CCCGG/CCGGG	1																																																																																1
CCGCG/CGCGG	4																																																																																4
AACAAG/CTTGTT						1																				1																																																							2
AAGACG/CGTCTT	1																																																																																1
AAGTCG/ACTTCG	1																																																																																1
AAGTGG/ACTTCC	1																																																																																1
ACCAGC/CTGGTG	1																																																																																1
ACGCCG/CGGCGT	1																																																																																1
AGCAGG/CCTGCT		1																																																																															1
AGCCCC/CTGGGG	1																																																																																1
AGCCGG/CCGGCT		1																																																																															1
