Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-103/megassr/results/hub_GCF_053207365.1/fasta/hub_GCF_053207365.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              12
Total size of examined sequences (bp):           2117902
Total number of identified SSRs:                 8
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	1
5	2
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
AG	-	-	-	1				1
AT	-	-	-	1			1	2
ATA	-	-	1					1
TTACA	1							1
TTTTA	1							1
GCGGTT	1							1
TCTGAT	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AG/CT	-	-	-	1				1
AT/AT	-	-	-	1			1	2
AAT/ATT	-	-	1					1
AAAAT/ATTTT	1							1
AATGT/ACATT	1							1
AACCGC/CGGTTG	1							1
AATCAG/ATTCTG	1							1
