Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-102/megassr/results/hub_GCF_053204445.1/fasta/hub_GCF_053204445.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              61
Total size of examined sequences (bp):           2329182
Total number of identified SSRs:                 13
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
5	5
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT	-	-	-					1	1
CAT	-	-	1						1
GCA	-	-	1						1
TGC	-	-	1						1
AAAAT	1								1
AACAA	1								1
CTCGC	1								1
TAAAA	1								1
TTTTG	1								1
AATCTG	1								1
ACAGCA	1								1
CAACAT	1								1
CTATAT	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT/AT	-	-	-					1	1
AGC/CTG	-	-	2						2
ATC/ATG	-	-	1						1
AAAAC/GTTTT	2								2
AAAAT/ATTTT	2								2
AGGCG/CCTCG	1								1
AACAGC/CTGTTG	1								1
AACATC/ATGTTG	1								1
AATCTG/AGATTC	1								1
AGATAT/ATATCT	1								1
