Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-101/megassr/results/hub_GCF_053203525.1/fasta/hub_GCF_053203525.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              27
Total size of examined sequences (bp):           2164886
Total number of identified SSRs:                 10
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
5	4
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AG	-	-	-	1	1
TA	-	-	-	1	1
AAT	-	-	1		1
GTT	-	-	1		1
AAGAC	1				1
TATTT	1				1
TTGTT	1				1
TTTAT	1				1
AGAAAA	1				1
CTAACA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AG/CT	-	-	-	1	1
AT/AT	-	-	-	1	1
AAC/GTT	-	-	1		1
AAT/ATT	-	-	1		1
AAAAC/GTTTT	1				1
AAAAT/ATTTT	2				2
AAGAC/CTTGT	1				1
AAAAAG/CTTTTT	1				1
AACACT/AGTGTT	1				1
