Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-89/megassr/results/hub_GCF_053203305.1/fasta/hub_GCF_053203305.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              33
Total size of examined sequences (bp):           2945176
Total number of identified SSRs:                 14
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	3
5	7
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
CAG	-	-	1	1
CTT	-	-	1	1
TCA	-	-	1	1
AAATT	1			1
ATAAA	1			1
GAAAA	2			2
TAAAA	1			1
TGTTT	1			1
TTTAC	1			1
CTTTCA	1			1
GAAAAA	1			1
TATTTT	1			1
TCTGCT	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
AAG/CTT	-	-	1	1
AGC/CTG	-	-	1	1
ATC/ATG	-	-	1	1
AAAAC/GTTTT	1			1
AAAAG/CTTTT	2			2
AAAAT/ATTTT	2			2
AAAGT/ACTTT	1			1
AAATT/AATTT	1			1
AAAAAG/CTTTTT	1			1
AAAAAT/ATTTTT	1			1
AAAGTG/ACTTTC	1			1
AAGCAG/CTGCTT	1			1
