Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-100/megassr/results/hub_GCF_053203125.1/fasta/hub_GCF_053203125.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              110
Total size of examined sequences (bp):           2366867
Total number of identified SSRs:                 8
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
4	1
5	2
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CT	-	-	-	1	1
CTTC	-		1		1
TTGAT	1				1
TTTCC	1				1
AAAACT	1				1
CAAGCA	1				1
TTGGAT	1				1
TTTTAC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AG/CT	-	-	-	1	1
AAGG/CCTT	-		1		1
AAAGG/CCTTT	1				1
AAATC/ATTTG	1				1
AAAACT/AGTTTT	1				1
AAAAGT/ACTTTT	1				1
AAATCC/ATTTGG	1				1
AAGCAC/CTTGTG	1				1
