Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-88/megassr/results/hub_GCF_053049545.1/fasta/hub_GCF_053049545.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              29
Total size of examined sequences (bp):           2990747
Total number of identified SSRs:                 24
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    6


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
5	7
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TA	-	-	-	1	1
ATT	-	-	1		1
GTT	-	-	1		1
TCA	-	-	1		1
AAGAA	1				1
AATAA	1				1
GAAAA	2				2
TTATT	1				1
TTTGA	1				1
TTTTC	1				1
AAAGAC			1		1
CTAAAC				1	1
GAAAAA	1				1
GCATCA	1				1
GCATCC	1		1		2
GCATCG	2				2
GCATCT			1		1
TCAGCA		1			1
TCGGCA	1				1
TCGGCG	1				1
TGTTTG	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
AAC/GTT	-	-	1		1
AAT/ATT	-	-	1		1
ATC/ATG	-	-	1		1
AAAAG/CTTTT	4				4
AAAAT/ATTTT	2				2
AAATC/ATTTG	1				1
AAAAAG/CTTTTT	1				1
AAACAC/GTGTTT	1				1
AAACCT/AGGTTT				1	1
AAAGAC/CTTTGT			1		1
ACGCCG/CGGCGT	1				1
AGATGC/ATCTGC			1		1
AGCATC/ATGCTG	1	1			2
ATCCGC/ATGCGG	1		1		2
ATCGGC/ATGCCG	3				3
