Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-112/megassr/results/hub_GCF_053049515.1/fasta/hub_GCF_053049515.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              37
Total size of examined sequences (bp):           2942513
Total number of identified SSRs:                 16
Number of SSR containing sequences:              7
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	1
5	3
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-	1		1
TA	-	-	-		1	1
TCA	-	-	1			1
ACAAG	1					1
TTCTT	1					1
TTTTC	1					1
AAAAAT	1					1
CAAATT	1					1
GATGCC		1				1
GCCGAT	1					1
GCGGAT	1					1
GCTACG	1					1
GCTGAT	1					1
GGTGTT	1					1
TAGAGA	1					1
TTCTGC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-	1	1	2
ATC/ATG	-	-	1			1
AAAAG/CTTTT	2					2
AAGAC/CTTGT	1					1
AAAAAT/ATTTTT	1					1
AAATTC/AATTTG	1					1
AACACC/GGTGTT	1					1
AAGCAG/CTGCTT	1					1
ACGGCT/AGCCGT	1					1
AGAGAT/ATCTCT	1					1
AGCATC/ATGCTG	1					1
ATCCGC/ATGCGG	1					1
ATCGGC/ATGCCG	1	1				2
