Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-111/megassr/results/hub_GCF_052660185.1/fasta/hub_GCF_052660185.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           5739887
Total number of identified SSRs:                 44
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	1
4	1
5	12
6	24

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CA	-	-	-				1	1
CG	-	-	-	3				3
GC	-	-	-	2				2
GGC	-	-		1				1
TGGC	-	1						1
ACTGC	1							1
CCAAC	1							1
CGCAG	1							1
GACGC	1							1
GCCCA	1							1
GCCGC	3							3
GCTTT					1			1
GGCGC	1							1
GTCGC	1							1
GTTCA	1							1
AAGATC	1							1
ACGCCG	1							1
AGATCA		1						1
AGCAGG					1			1
AGGGCG	1							1
CAAAAG	1							1
CAAGCA	1							1
CCACCG	1							1
CCACGG	1							1
CCAGCC	1							1
CCGGCA	1							1
CGCCAC	1							1
CGGCGA	1							1
CTTGAT	1							1
CTTGTG	1							1
GCGACG	1							1
GCGGGC	1							1
GCTGTT						1		1
GGCAGT	1							1
GGCCAC		1						1
GGCCAT	1							1
GGCGCT	1							1
TGTTCC	1							1
TTTGCT	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AC/GT	-	-	-				1	1
CG/CG	-	-	-	5				5
CCG/CGG	-	-		1				1
AGCC/CTGG	-	1						1
AAAGC/CTTTG					1			1
AACCC/GGGTT	1							1
AACTG/AGTTC	1							1
ACGCG/CGCGT	2							2
ACTGC/AGTGC	1							1
AGCCC/CTGGG	1							1
AGCGC/CGCTG	1							1
CCGCG/CGCGG	4							4
AAAAGC/CTTTTG	2							2
AACAGC/CTGTTG						1		1
AACAGG/CCTGTT	1							1
AAGATC/ATCTTG	2	1						3
AAGCAC/CTTGTG	2							2
ACCGCC/CGGTGG	2							2
ACCGGC/CCGGTG	1							1
ACGCCG/CGGCGT	1							1
ACGGCC/CCGTGG	1	1						2
ACGGCG/CCGTCG	2							2
ACTGCC/AGTGGC	1							1
AGCAGG/CCTGCT					1			1
AGCCCC/CTGGGG	1							1
AGCGCC/CGCTGG	1							1
AGGGCG/CCCTCG	1							1
ATGGCC/ATGGCC	1							1
CCCGCG/CGCGGG	1							1
