Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-110/megassr/results/hub_GCF_052659885.1/fasta/hub_GCF_052659885.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           6140546
Total number of identified SSRs:                 35
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	3
4	1
5	11
6	17

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	1	1
GC	-	-	-	2	2
CGG	-	-	2		2
TGG	-	-	1		1
GTCG	-	1			1
AGCCA	1				1
AGCGC	1				1
CAAAG		1			1
CAACT	1				1
CCGAC	1				1
CTGCC	1				1
GCGGC	1				1
GGCTT	1				1
GTTGG	1				1
TGGGC	2				2
AGCCGG	1				1
CAGCAA	1				1
CCAGCC	1				1
CCGATG	1				1
CCGGCA	1				1
CGGTGC	1				1
CGGTGG	1				1
CTTGGC	1				1
GACACT		1			1
GGCCTG	1				1
GGGCCA	1				1
GGGCCT	1				1
GTCGAT			1		1
TCGGCG	1				1
TGGCCG	1				1
TGGTTT			1		1
TTGATC		1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	3	3
ACC/GGT	-	-	1		1
CCG/CGG	-	-	2		2
ACCG/CGGT	-	1			1
AAAGC/CTTTG		1			1
AACCC/GGGTT	1				1
AACTC/AGTTG	1				1
AAGCC/CTTGG	2				2
ACCCG/CGGGT	1				1
AGCCC/CTGGG	2				2
AGCGC/CGCTG	1				1
AGGGC/CCCTG	1				1
CCGCG/CGCGG	1				1
AAAACC/GGTTTT			1		1
AACAGC/CTGTTG	1				1
AAGATC/ATCTTG		1			1
AAGGCC/CCTTGG	1				1
ACACTG/AGTGTC		1			1
ACATCG/ATGTCG			1		1
ACCGCC/CGGTGG	1				1
ACCGGC/CCGGTG	2				2
ACGCCG/CGGCGT	1				1
ACGGCC/CCGTGG	1				1
AGCCCC/CTGGGG	1				1
AGCCGG/CCGGCT	1				1
AGGCCC/CCTGGG	2				2
AGGGCC/CCCTGG	1				1
ATCGGC/ATGCCG	1				1
