Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-116/megassr/results/hub_GCF_052409275.1/fasta/hub_GCF_052409275.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              12
Total size of examined sequences (bp):           4903120
Total number of identified SSRs:                 22
Number of SSR containing sequences:              6
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	7
4	1
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	2	2
GA	-	-	-	1	1
GC	-	-	-	2	2
CAA	-	-	1		1
CAG	-	-	1		1
CCG	-	-	1		1
CGA	-	-	1		1
CGG	-	-	1		1
GCC	-	-	1		1
TGA	-	-	1		1
TAGG	-	1			1
ATCGC	1				1
CGACG	1				1
CGGCG	1				1
CGACTT	1				1
CTGGCG	1				1
GACGGT		1			1
GCTGCC	1				1
GCTGGC	1				1
TGAAGC				1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AG/CT	-	-	-	1	1
CG/CG	-	-	-	4	4
AAC/GTT	-	-	1		1
ACG/CGT	-	-	1		1
AGC/CTG	-	-	1		1
ATC/ATG	-	-	1		1
CCG/CGG	-	-	3		3
ACCT/AGGT	-	1			1
ACGCG/CGCGT	1				1
ATCGC/ATGCG	1				1
CCGCG/CGCGG	1				1
AAGCTG/AGCTTC				1	1
AAGTCG/ACTTCG	1				1
ACCGTC/ACGGTG		1			1
AGCGCC/CGCTGG	2				2
AGCGGC/CCGCTG	1				1
