Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-99/megassr/results/hub_GCF_052371255.1/fasta/hub_GCF_052371255.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              13
Total size of examined sequences (bp):           6851667
Total number of identified SSRs:                 49
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
5	11
6	34

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
GC	-	-	-	1						1
GAG	-	-							1	1
GCG	-	-		1						1
GTG	-	-						1		1
AATTG	1									1
CCGAC	1									1
CGCGG	1									1
CGGCG	1									1
CTGCG	1									1
GCCGC	2									2
GGCGC	1									1
GGGCC	1									1
GTCCC	1									1
GTGCC	1									1
CAGGAA	1									1
CAGGCA	1									1
CAGGGA			1							1
CAGGGC	1									1
CCAGGC	1									1
CCCTGG	1									1
CCGCCA	1									1
CCTGGC	1									1
CGCAGC	1	1								2
CGCTGG	1									1
CGGTGC	1									1
CTGGGC	1									1
CTGGTG	1									1
CTTGAT	1									1
CTTGGC	1									1
GATCAC				1						1
GCCCTG	2									2
GCCGCT			1							1
GCCTGA	1									1
GCCTGG	1									1
GCGCCG	1									1
GCTGGA					1					1
GGCCAG	1									1
GGCCAT	1									1
GGCCCT	1									1
GGGCAA	1									1
TCCTCA		1								1
TGCTCC				1						1
TGGCTT		1								1
TGGGCC	1									1
TTCCAC	1									1
TTTGCT		1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	1						1
ACC/GGT	-	-						1		1
AGG/CCT	-	-							1	1
CCG/CGG	-	-		1						1
AATTC/AATTG	1									1
ACCCG/CGGGT	1									1
ACGGC/CCGTG	1									1
ACGGG/CCCGT	1									1
AGCGC/CGCTG	1									1
CCCGG/CCGGG	1									1
CCGCG/CGCGG	5									5
AAAAGC/CTTTTG		1								1
AAAGCC/CTTTGG		1								1
AACAGG/CCTGTT	1									1
AAGATC/ATCTTG	1									1
AAGGCC/CCTTGG	1									1
AAGGGC/CCCTTG	1									1
AAGTGG/ACTTCC	1									1
ACAGGC/CCTGTG	1									1
ACAGGG/CCCTGT			1							1
ACCAGC/CTGGTG	1									1
ACCGCC/CGGTGG	1									1
ACCGGC/CCGGTG	1									1
ACGATC/ATCGTG				1						1
AGCAGG/CCTGCT				1						1
AGCCGC/CGGCTG	1	1								2
AGCCTG/AGGCTC	1									1
AGCGCC/CGCTGG	1									1
AGCGGC/CCGCTG			1							1
AGCTCC/AGCTGG					1					1
AGGATG/ATCCTC		1								1
AGGCCC/CCTGGG	4									4
AGGGCC/CCCTGG	7									7
ATGGCC/ATGGCC	1									1
CCGGCG/CCGGCG	1									1
