Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-130/megassr/results/hub_GCF_051547625.1/fasta/hub_GCF_051547625.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              89
Total size of examined sequences (bp):           5427145
Total number of identified SSRs:                 41
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  12
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	9
3	16
5	5
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	4	2	6
GC	-	-	-	3		3
CAG	-	-	1			1
CCG	-	-	3			3
CGC	-	-		1		1
CGG	-	-	3	1		4
CTG	-	-	1			1
GAC	-	-	1			1
GCA	-	-	1			1
GCG	-	-	1	1		2
GCT	-	-	1			1
GGC	-	-	1			1
AATCT	1					1
CCGCG	1					1
CGCCG	1					1
CGGGC	1					1
GCGCC	1					1
AATGGC	1					1
CAGCGC	1					1
CCAGGC	1					1
CGACTT	1					1
CGCTGA	1					1
GCGCCT	1					1
GCTCCG		1				1
TATTTT	1					1
TCATCG		1				1
TCTTCG	1					1
TTCCAC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	7	2	9
ACG/CGT	-	-	1			1
AGC/CTG	-	-	4			4
CCG/CGG	-	-	8	3		11
AATCT/AGATT	1					1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	3					3
AAAAAT/ATTTTT	1					1
AAGACG/CGTCTT	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
AATGGC/ATTGCC	1					1
ACGATG/ATCGTC		1				1
ACGCTG/AGCGTC	1					1
AGCCGG/CCGGCT		1				1
AGCGCC/CGCTGG	1					1
AGGCCC/CCTGGG	1					1
AGGCGC/CCTGCG	1					1
