Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-149/megassr/results/hub_GCF_051547565.1/fasta/hub_GCF_051547565.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              91
Total size of examined sequences (bp):           5509615
Total number of identified SSRs:                 37
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  12
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	18
5	6
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	2	1				3
GC	-	-	-	1					1
CAG	-	-	1					1	2
CCG	-	-	3						3
CGC	-	-	2						2
CGG	-	-	2						2
CTG	-	-	2						2
GAC	-	-	1						1
GCA	-	-	2						2
GCC	-	-	1	1					2
GCG	-	-	1						1
GTC	-	-	1						1
AATAA	1								1
CCACG	1								1
CCCGG	1								1
CCGCG	1								1
GCGCC	1								1
GGTCA			1						1
AGAGGA	1								1
CGACTT	1								1
CGGTAT	1								1
CTCTCA						1			1
CTGGTG	1								1
GCTCCG		1							1
GGCCAG	1								1
GTGGAA	1								1
TCTTCG	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	3	1				4
ACG/CGT	-	-	2						2
AGC/CTG	-	-	5					1	6
CCG/CGG	-	-	9	1					10
AAAAT/ATTTT	1								1
ACCTG/AGGTC			1						1
ACGCC/CGTGG	1								1
CCCGG/CCGGG	1								1
CCGCG/CGCGG	2								2
AAGACG/CGTCTT	1								1
AAGAGG/CCTCTT	1								1
AAGTCG/ACTTCG	1								1
AAGTGG/ACTTCC	1								1
ACCAGC/CTGGTG	1								1
ACCGAT/ATCGGT	1								1
ACTCTC/AGAGTG						1			1
AGCCGG/CCGGCT		1							1
AGGGCC/CCCTGG	1								1
