Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-138/megassr/results/hub_GCF_051386235.1/fasta/hub_GCF_051386235.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              211
Total size of examined sequences (bp):           4054720
Total number of identified SSRs:                 25
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
4	3
5	4
6	14

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
GT	-	-	-	1																1
TA	-	-	-	1																1
ACC	-	-	1																	1
GAT	-	-	1																	1
CTAT	-			1																1
TAAA	-			1																1
TCTA	-	1																		1
AAAGA	1																			1
AATCG	1																			1
ATTTA	1																			1
TAAAA	1																			1
AAAAAT	1																			1
AAAGAT	1																			1
AGCTAC	1																			1
ATAACA	1																			1
ATATGA	1																			1
CTGTTG																			1	1
GATACA	1																			1
GGTGCT	1																			1
TAATAC	1																			1
TATTGC	1																			1
TCCTTA									1											1
TGAGCC			1																	1
TGGAGC										1										1
TTTTTA	1																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
AC/GT	-	-	-	1																1
AT/AT	-	-	-	1																1
ACC/GGT	-	-	1																	1
ATC/ATG	-	-	1																	1
AAAT/ATTT	-			1																1
AGAT/ATCT	-	1		1																2
AAAAG/CTTTT	1																			1
AAAAT/ATTTT	1																			1
AAATT/AATTT	1																			1
AATCG/ATTCG	1																			1
AAAAAT/ATTTTT	2																			2
AAAGAT/ATCTTT	1																			1
AACAAT/ATTGTT	1																			1
AACAGC/CTGTTG																			1	1
AAGGAT/ATCCTT									1											1
AATACT/AGTATT	1																			1
AATAGC/ATTGCT	1																			1
AATATG/ATATTC	1																			1
ACAGAT/ATCTGT	1																			1
ACAGCT/AGCTGT	1																			1
ACCAGC/CTGGTG	1																			1
AGCCTG/AGGCTC			1																	1
AGCTCC/AGCTGG										1										1
