Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-137/megassr/results/hub_GCF_051386215.1/fasta/hub_GCF_051386215.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              408
Total size of examined sequences (bp):           4085376
Total number of identified SSRs:                 26
Number of SSR containing sequences:              22
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
4	3
5	3
6	16

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
GT	-	-	-	1						1
TA	-	-	-	1						1
ATC	-	-	1							1
GGT	-	-	1							1
ATAG	-	1								1
CTAT	-			1						1
TAAA	-	1								1
AAAGA	1									1
AATCG	1									1
TTAAT	1									1
AAAAAT		1								1
AAAGAT	1									1
ACCAGC	1									1
AGCAAC					1					1
AGCAAT		1								1
AGGCTC			1							1
ATTAGT	1									1
GGAGCT						1				1
GTTGCT						1				1
TAGCAA	1									1
TATCTG	1									1
TCATAT			1							1
TCCTTA									1	1
TGGAGC					1					1
TTATTG	1									1
TTTTTA	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AC/GT	-	-	-	1						1
AT/AT	-	-	-	1						1
ACC/GGT	-	-	1							1
ATC/ATG	-	-	1							1
AAAT/ATTT	-	1								1
AGAT/ATCT	-	1		1						2
AAAAG/CTTTT	1									1
AAATT/AATTT	1									1
AATCG/ATTCG	1									1
AAAAAT/ATTTTT	1	1								2
AAAGAT/ATCTTT	1									1
AACAAT/ATTGTT	1									1
AACAGC/CTGTTG					1	1				2
AAGGAT/ATCCTT									1	1
AATACT/AGTATT	1									1
AATAGC/ATTGCT	1	1								2
AATATG/ATATTC			1							1
ACAGAT/ATCTGT	1									1
ACCAGC/CTGGTG	1									1
AGCCTG/AGGCTC			1							1
AGCTCC/AGCTGG					1	1				2
