Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-135/megassr/results/hub_GCF_051386175.1/fasta/hub_GCF_051386175.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              329
Total size of examined sequences (bp):           4054587
Total number of identified SSRs:                 24
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
4	2
5	4
6	14

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AC	-	-	-	1							1
AT	-	-	-	1							1
GAT	-	-	1								1
GGT	-	-	1								1
CTAT	-			1							1
TAAA	-			1							1
AAAGA	1										1
ATTAA	1										1
CGATT	1										1
TAAAA	1										1
AAAAAT	1										1
ACAGCA										1	1
ACCAGC	1										1
AGCTAC	1										1
ATTAGT	1										1
GATACA	1										1
GCTCCA				1							1
TAGCAA	1										1
TCATAT	1										1
TCCTTA										1	1
TCTTTA		1									1
TGAGCC		1									1
TTATTG	1										1
TTTTTA	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AC/GT	-	-	-	1							1
AT/AT	-	-	-	1							1
ACC/GGT	-	-	1								1
ATC/ATG	-	-	1								1
AAAT/ATTT	-			1							1
AGAT/ATCT	-			1							1
AAAAG/CTTTT	1										1
AAAAT/ATTTT	1										1
AAATT/AATTT	1										1
AATCG/ATTCG	1										1
AAAAAT/ATTTTT	2										2
AAAGAT/ATCTTT		1									1
AACAAT/ATTGTT	1										1
AACAGC/CTGTTG										1	1
AAGGAT/ATCCTT										1	1
AATACT/AGTATT	1										1
AATAGC/ATTGCT	1										1
AATATG/ATATTC	1										1
ACAGAT/ATCTGT	1										1
ACAGCT/AGCTGT	1										1
ACCAGC/CTGGTG	1										1
AGCCTG/AGGCTC		1									1
AGCTCC/AGCTGG				1							1
