Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-109/megassr/results/hub_GCF_051386155.1/fasta/hub_GCF_051386155.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              76
Total size of examined sequences (bp):           4044332
Total number of identified SSRs:                 14
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
4	1
5	2
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
GT	-	-	-	1													1
ATG	-	-	1														1
CTT	-	-	1														1
CTAT	-	1															1
AATAA	1																1
TTTTA	1																1
ACAGCA																1	1
ATATGA			1														1
ATTAAG		1															1
CCAGCT									1								1
GGTGCT					1												1
TCCTTA							1										1
TTTTAA				1													1
TTTTTG		1															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
AC/GT	-	-	-	1													1
AAG/CTT	-	-	1														1
ATC/ATG	-	-	1														1
AGAT/ATCT	-	1															1
AAAAT/ATTTT	2																2
AAAAAC/GTTTTT		1															1
AAAATT/AATTTT				1													1
AACAGC/CTGTTG																1	1
AAGATT/AATCTT		1															1
AAGGAT/ATCCTT							1										1
AATATG/ATATTC			1														1
ACCAGC/CTGGTG					1												1
AGCTCC/AGCTGG									1								1
