Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-108/megassr/results/hub_GCF_051386115.1/fasta/hub_GCF_051386115.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              57
Total size of examined sequences (bp):           3775716
Total number of identified SSRs:                 15
Number of SSR containing sequences:              7
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	1
4	3
5	5
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
AC	-	-	-	1															1
ACC	-	-	1																1
ATGG	-	1																	1
TATC	-				1														1
TCTA	-										1								1
AAATA	1																		1
AATTA	1																		1
ATGAA	1																		1
CGATT	1																		1
TTTTA	1																		1
ACCAGC	1																		1
AGCTAC	1																		1
CCAGCT														1					1
CTGTTG																		1	1
TCCTTA								1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
AC/GT	-	-	-	1															1
ACC/GGT	-	-	1																1
AGAT/ATCT	-				1						1								2
ATCC/ATGG	-	1																	1
AAAAT/ATTTT	2																		2
AAATG/ATTTC	1																		1
AAATT/AATTT	1																		1
AATCG/ATTCG	1																		1
AACAGC/CTGTTG																		1	1
AAGGAT/ATCCTT								1											1
ACAGCT/AGCTGT	1																		1
ACCAGC/CTGGTG	1																		1
AGCTCC/AGCTGG														1					1
