Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-98/megassr/results/hub_GCF_051136705.1/fasta/hub_GCF_051136705.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              447
Total size of examined sequences (bp):           4711238
Total number of identified SSRs:                 17
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	1
3	3
4	2
5	2
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1			1				1	3
GC	-	-	-	1																							1
CCG	-	-	1																								1
CGG	-	-	1																								1
GCC	-	-	1																								1
ATAA	-	1																									1
GCTG	-	1																									1
CCACG	1																										1
TAATG	1																										1
CCACCC	1																										1
CTGGCG	1																										1
GAAGTC	1																										1
GCTGGC	1																										1
GGTGCA			1																								1
TTGTAT	1																										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1			1				1	3
CG/CG	-	-	-	1																							1
CCG/CGG	-	-	3																								3
AAAT/ATTT	-	1																									1
AGCC/CTGG	-	1																									1
AATGT/ACATT	1																										1
ACGCC/CGTGG	1																										1
AAATAC/ATTTGT	1																										1
AAGTCG/ACTTCG	1																										1
ACCCCC/GGGGGT	1																										1
ACCTGC/AGGTGC			1																								1
AGCGCC/CGCTGG	2																										2
