Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-97/megassr/results/hub_GCF_051129895.1/fasta/hub_GCF_051129895.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              131
Total size of examined sequences (bp):           5925132
Total number of identified SSRs:                 49
Number of SSR containing sequences:              29
Number of sequences containing more than 1 SSR:  12
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	4
3	7
5	2
6	35

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																																																												1	1
CG	-	-	-	3																																																																																																																										3
GC	-	-	-	1																																																																																																																										1
CCG	-	-	2																																																																																																																											2
CGC	-	-	1																																																																																																																											1
CGG	-	-	1																																																																																																																											1
GGC	-	-	1																																																																																																																											1
GGT	-	-	2																																																																																																																											2
CTGGC	1																																																																																																																													1
GCGGC	1																																																																																																																													1
AAACCC					1																																																																																																																									1
AAGCCA	1			1																																																																																																																										2
ATCGGC	1																																																																																																																													1
ATGGCC	1																																																																																																																													1
CAGCCT		1																																																																																																																												1
CAGCTC	1																																																																																																																													1
CAGGAA	1																																																																																																																													1
CAGGCC	1																																																																																																																													1
CCAAAG		1																																																																																																																												1
CCTTGG	1		1																																																																																																																											2
CTGCTC	1																																																																																																																													1
CTTGGG									1																																																																																																																					1
GAAGCC	1	1																																																																																																																												2
GATCCT										1																																																																																																																				1
GCACCG	1																																																																																																																													1
GCCAAA		1		1																																																																																																																										2
GCTGGT	1																																																																																																																													1
GGAGCA	1																																																																																																																													1
GGGCAA	1																																																																																																																													1
GGGCCT	1																																																																																																																													1
GGGCTT	1																																																																																																																													1
GGGTTT							1																																																																																																																							1
TCAAGG	1																																																																																																																													1
TGCCGA			1																																																																																																																											1
TTGGCT	1	2																																																																																																																												3
TTGGGC		1					1																																																																																																																							2
TTGGGT	1																																																																																																																													1
TTTGGC									1																																																																																																																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																																																												1	1
CG/CG	-	-	-	4																																																																																																																										4
ACC/GGT	-	-	2																																																																																																																											2
CCG/CGG	-	-	5																																																																																																																											5
AGGCC/CCTGG	1																																																																																																																													1
CCGCG/CGCGG	1																																																																																																																													1
AAACCC/GGGTTT	1				1		1																																																																																																																							3
AAAGCC/CTTTGG	2	4		2					1																																																																																																																					9
AACAGG/CCTGTT	1																																																																																																																													1
AAGCCC/CTTGGG	1	1					1		1																																																																																																																					4
AAGCCG/CGGCTT	1	1																																																																																																																												2
AAGGCC/CCTTGG	1		1																																																																																																																											2
AAGGGC/CCCTTG	1																																																																																																																													1
AAGGTC/ACCTTG	1																																																																																																																													1
ACCAGC/CTGGTG	1																																																																																																																													1
ACCGGC/CCGGTG	1																																																																																																																													1
AGCAGG/CCTGCT	2																																																																																																																													2
AGCCTC/AGGCTG		1																																																																																																																												1
AGCTCC/AGCTGG	1																																																																																																																													1
AGGATC/ATCCTG										1																																																																																																																				1
AGGCCC/CCTGGG	2																																																																																																																													2
ATCGGC/ATGCCG	1		1																																																																																																																											2
ATGGCC/ATGGCC	1																																																																																																																													1
