Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-87/megassr/results/hub_GCF_051129855.1/fasta/hub_GCF_051129855.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              63
Total size of examined sequences (bp):           4312001
Total number of identified SSRs:                 21
Number of SSR containing sequences:              7
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	6
4	2
5	5
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
AT	-	-	-		1			1
ACC	-	-	1					1
CAG	-	-	2					2
CCG	-	-	2					2
GCC	-	-	1					1
AAAT	-	1						1
TTTA	-	1						1
AATCA						1		1
ACAGA	1							1
CGGAA	1							1
TTATA	1							1
TTTTG	1							1
AAAGCG	1							1
AGCAAT	1							1
AGCGGC							1	1
GGTTTT	1							1
GTGACA	1							1
TAACAA			1					1
TATCTG	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AT/AT	-	-	-		1			1
ACC/GGT	-	-	1					1
AGC/CTG	-	-	2					2
CCG/CGG	-	-	3					3
AAAT/ATTT	-	2						2
AAAAC/GTTTT	1							1
AAATC/ATTTG						1		1
AACAG/CTGTT	1							1
AACGG/CCGTT	1							1
AATAT/ATATT	1							1
AAAACC/GGTTTT	1							1
AAAGCG/CGCTTT	1							1
AACAAT/ATTGTT			1					1
AATAGC/ATTGCT	1							1
ACAGAT/ATCTGT	1							1
ACAGTG/ACTGTC	1							1
AGCGGC/CCGCTG							1	1
