Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-107/megassr/results/hub_GCF_051129805.1/fasta/hub_GCF_051129805.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              103
Total size of examined sequences (bp):           5538731
Total number of identified SSRs:                 25
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	7
5	5
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AT	-	-	-	1									1
CG	-	-	-	1									1
GA	-	-	-		1								1
CAC	-	-	1										1
CCA	-	-	1										1
CGG	-	-	2										2
CTG	-	-	1										1
GCG	-	-	1										1
GGC	-	-	1										1
AAACA	1												1
CACAT	1												1
CCGCG	1												1
CGCGG	1												1
GGCCG	1												1
AATGAA				1									1
AGGGTC	1												1
CAGCGC	1												1
CCCACG		1											1
CGGTGT					1								1
GCAGGG	1												1
GCCAGA												1	1
TATCTG					1								1
TCGCCG	1												1
TTCCGT	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AG/CT	-	-	-		1								1
AT/AT	-	-	-	1									1
CG/CG	-	-	-	1									1
ACC/GGT	-	-	2										2
AGC/CTG	-	-	1										1
CCG/CGG	-	-	4										4
AAAAC/GTTTT	1												1
ACATC/ATGTG	1												1
CCCGG/CCGGG	1												1
CCGCG/CGCGG	2												2
AAAATG/ATTTTC				1									1
AAACGG/CCGTTT	1												1
ACACCG/CGGTGT					1								1
ACAGAT/ATCTGT					1								1
ACCCTG/AGGGTC	1												1
ACGCCC/CGTGGG		1											1
ACGGCG/CCGTCG	1												1
AGAGCC/CTCTGG												1	1
AGCGCC/CGCTGG	1												1
AGGGGC/CCCCTG	1												1
