Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-86/megassr/results/hub_GCF_051129765.1/fasta/hub_GCF_051129765.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              81
Total size of examined sequences (bp):           4666162
Total number of identified SSRs:                 26
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
4	1
5	15
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
GA	-	-	-	1	1
TTAT	-	1			1
AAATT	1				1
AATAT	1				1
ATATA	1				1
CTTTT	1				1
GAACT	1				1
GATTT		1			1
GCTGC	1				1
GTAGG	1				1
GTGGG	1				1
GTTTT	1				1
TAATA	1				1
TATTT		1			1
TCAAT	1				1
TTATT	1				1
TTTGC	1				1
AAAATA			1		1
GACGAA	1				1
TAAAAA			1		1
TAAATA		1			1
TATTGA	1				1
TTATTT	1	1	1		3

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AG/CT	-	-	-	1	1
AT/AT	-	-	-	1	1
AAAT/ATTT	-	1			1
AAAAC/GTTTT	1				1
AAAAG/CTTTT	1				1
AAAAT/ATTTT	1	1			2
AAAGC/CTTTG	1				1
AAATC/ATTTG		1			1
AAATT/AATTT	1				1
AACTG/AGTTC	1				1
AATAT/ATATT	3				3
AATTC/AATTG	1				1
ACCCC/GGGGT	1				1
ACCCT/AGGGT	1				1
AGCGC/CGCTG	1				1
AAAAAT/ATTTTT	1	1	3		5
AAATAT/ATATTT		1			1
AAGACG/CGTCTT	1				1
AATATC/ATATTG	1				1
