Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-149/megassr/results/hub_GCF_051054195.1/fasta/hub_GCF_051054195.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1179881
Total number of identified SSRs:                 23
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	7
3	2
5	7
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		1	2
AT	-	-	-	1						1	1										3
TA	-	-	-					2	1			1									4
TTA	-	-		1																	1
TTG	-	-	1																		1
AAATA	1																				1
ATATA	1																				1
ATTTT	1																				1
CTTTT	1																				1
TAAAA	1																				1
TATTA	1																				1
TTTAA	1																				1
ATAATT	1																				1
ATCTTT	1																				1
TAGAAA	1																				1
TCTTTT	1																				1
TTTAAG	1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		1	2
AT/AT	-	-	-	1				2	1	1	1	1									7
AAC/GTT	-	-	1																		1
AAT/ATT	-	-		1																	1
AAAAG/CTTTT	1																				1
AAAAT/ATTTT	3																				3
AAATT/AATTT	1																				1
AATAT/ATATT	2																				2
AAAAAG/CTTTTT	1																				1
AAACTT/AAGTTT	1																				1
AAAGAT/ATCTTT	1																				1
AAATAG/ATTTCT	1																				1
AATTAT/AATTAT	1																				1
