Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-148/megassr/results/hub_GCF_051054175.1/fasta/hub_GCF_051054175.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1177501
Total number of identified SSRs:                 22
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	7
3	3
5	7
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
AT	-	-	-						1	1						1			3
TA	-	-	-				1	2			1								4
TAA	-	-	1																1
TTA	-	-		1															1
TTG	-	-	1																1
AAATA	1																		1
ATATA	1																		1
ATTTT	1																		1
CTTTT	1																		1
TAAAA	1																		1
TATTA	1																		1
TTTAA	1																		1
ATAATT	1																		1
ATCTTT	1																		1
TCTTTT	1																		1
TTTAAG	1																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
AT/AT	-	-	-				1	2	1	1	1					1			7
AAC/GTT	-	-	1																1
AAT/ATT	-	-	1	1															2
AAAAG/CTTTT	1																		1
AAAAT/ATTTT	3																		3
AAATT/AATTT	1																		1
AATAT/ATATT	2																		2
AAAAAG/CTTTTT	1																		1
AAACTT/AAGTTT	1																		1
AAAGAT/ATCTTT	1																		1
AATTAT/AATTAT	1																		1
