Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-102/megassr/results/hub_GCF_051053435.1/fasta/hub_GCF_051053435.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1033595
Total number of identified SSRs:                 29
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	15
3	3
5	5
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AT	-	-	-	2		1	1						4
TA	-	-	-	1		1	3	1	2	1	1	1	11
AAT	-	-			2	1							3
ATAAT	1												1
ATATT	1												1
CTTTT	1												1
TATTT	1												1
TTTTA	1												1
AAGAAA	1												1
ATCAAT	1												1
CCAACT	1												1
GTGGTA	1												1
TAAAAG	1												1
TTTAAG	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AT/AT	-	-	-	3		2	4	1	2	1	1	1	15
AAT/ATT	-	-			2	1							3
AAAAG/CTTTT	1												1
AAAAT/ATTTT	2												2
AATAT/ATATT	2												2
AAAAAG/CTTTTT	1												1
AAAAGT/ACTTTT	1												1
AAACTT/AAGTTT	1												1
AACTCC/AGTTGG	1												1
AATATC/ATATTG	1												1
ACCACT/AGTGGT	1												1
