Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-146/megassr/results/hub_GCF_051052395.1/fasta/hub_GCF_051052395.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1196106
Total number of identified SSRs:                 21
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	1
5	7
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AT	-	-	-	1						1		1	3
TA	-	-	-	1				2		1	1		5
TTA	-	-		1									1
AAATA	1												1
ATATA	1												1
ATTTT	1												1
CTTTT	1												1
TAAAA	1												1
TATTA	1												1
TTTAA	1												1
ATAATT	1												1
ATCTTT	1												1
TAGAAA	1												1
TCTTTT	1												1
TTTAAG	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AT/AT	-	-	-	2				2		2	1	1	8
AAT/ATT	-	-		1									1
AAAAG/CTTTT	1												1
AAAAT/ATTTT	3												3
AAATT/AATTT	1												1
AATAT/ATATT	2												2
AAAAAG/CTTTTT	1												1
AAACTT/AAGTTT	1												1
AAAGAT/ATCTTT	1												1
AAATAG/ATTTCT	1												1
AATTAT/AATTAT	1												1
