Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-127/megassr/results/hub_GCF_050845995.1/fasta/hub_GCF_050845995.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              37
Total size of examined sequences (bp):           5133413
Total number of identified SSRs:                 55
Number of SSR containing sequences:              28
Number of sequences containing more than 1 SSR:  13
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	13
3	25
4	1
5	8
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	6		6
GC	-	-	-	5	2	7
AGC	-	-		1		1
CAG	-	-	1	1		2
CCG	-	-	4			4
CGC	-	-	3	1		4
CGG	-	-	2			2
CTG	-	-	1			1
GCA	-	-	3			3
GCC	-	-	2			2
GCG	-	-	2			2
GCT	-	-	1	1		2
GGC	-	-	1			1
TGC	-	-	1			1
GCCG	-	1				1
CGCCG	2					2
CGCGC	1					1
CTGCG	1					1
GCGGC	1					1
GGCGC	2					2
TGTTT	1					1
ACCGGC	1					1
CCGGCA	1					1
GCATCG	1					1
GCGCCA	1					1
GCTGGC	1					1
GTGCCG	1					1
GTTTTT		1				1
TCGCCG	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	11	2	13
AGC/CTG	-	-	7	3		10
CCG/CGG	-	-	14	1		15
CCGG/CCGG	-	1				1
AAAAC/GTTTT	1					1
AGCGC/CGCTG	1					1
CCGCG/CGCGG	6					6
AAAAAC/GTTTTT		1				1
ACCGGC/CCGGTG	3					3
ACGGCG/CCGTCG	1					1
AGCGCC/CGCTGG	2					2
ATCGGC/ATGCCG	1					1
