Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-114/megassr/results/hub_GCF_050633025.1/fasta/hub_GCF_050633025.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              226
Total size of examined sequences (bp):           3658729
Total number of identified SSRs:                 22
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	4
4	1
5	4
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CCA	-	-	1										1
GCA	-	-	1										1
GCC	-	-	1										1
TCT	-	-	1										1
CCAA	-											1	1
AGAGC										1			1
CCCGG	1												1
CGTGC	1												1
GCAGA									1				1
ATGGTC		1											1
CAGCAA	1												1
CGCTGG	1												1
CGTCTG	1												1
CTCTGC		1											1
CTTGGG	1												1
GACCAT		1											1
GCCAGC	1												1
TCTGCC			1										1
TGGCCG	1												1
TGGCGG	1												1
TGTTGC		1											1
TTGCCC	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AAG/CTT	-	-	1										1
ACC/GGT	-	-	1										1
AGC/CTG	-	-	1										1
CCG/CGG	-	-	1										1
AACC/GGTT	-											1	1
ACGGC/CCGTG	1												1
AGAGC/CTCTG									1	1			2
CCCGG/CCGGG	1												1
AACAGC/CTGTTG	1	1											2
AAGCCC/CTTGGG	1												1
AAGGGC/CCCTTG	1												1
ACCATG/ATGGTC		2											2
ACCGCC/CGGTGG	1												1
ACGCAG/CGTCTG	1												1
ACGGCC/CCGTGG	1												1
AGAGGC/CCTCTG		1	1										2
AGCGCC/CGCTGG	2												2
