Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-95/megassr/results/hub_GCF_050507335.1/fasta/hub_GCF_050507335.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           6950880
Total number of identified SSRs:                 45
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	1
4	2
5	11
6	31

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	total
ACC	-	-										1																	1
AGCC	-			1																									1
ATGG	-									1																			1
CCAGG	1																												1
CCCAT	1																												1
CCGGT	1																												1
CGCAG	1																												1
CGGCG	1																												1
GCCGC	1																												1
GCCTT	1																												1
GCGCG	1																												1
GCGGC	1																												1
GGCGG	1																												1
GGGCT	1																												1
AATAAA	1																												1
CAAGGG		1																											1
CACCAG	1																												1
CAGGAG																												1	1
CCAATC	1																												1
CCAGCG	1																												1
CCAGGC	1																												1
CCAGGG	1																												1
CCCCTT	1																												1
CCCGGG	1																												1
CCTGCA			1																										1
CCTGGC	1																												1
CGCCAC	1																												1
CTACCA			1																										1
CTCTGC	1																												1
CTGGGG	1																												1
CTTGGC	1																												1
GACCAA	1																												1
GACCTG	1																												1
GCCGGT	1																												1
GCCTGA				1																									1
GCGCTG	1																												1
GCTCCA								1																					1
GGCCCA	1																												1
GGGCCA	2																												2
GGGCCT	1																												1
GTGATC								1																					1
TGCAAG	1																												1
TTGCTC	1																												1
TTTGGC					1																								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	total
ACC/GGT	-	-										1																	1
AGCC/CTGG	-			1																									1
ATCC/ATGG	-									1																			1
AAGGC/CCTTG	1																												1
ACCGG/CCGGT	1																												1
AGCCC/CTGGG	1																												1
AGCGC/CGCTG	1																												1
AGGCC/CCTGG	1																												1
ATCCC/ATGGG	1																												1
CCCCG/CGGGG	1																												1
CCGCG/CGCGG	4																												4
AAAAAT/ATTTTT	1																												1
AAAGCC/CTTTGG					1																								1
AAGACC/CTTGGT	1																												1
AAGAGC/CTCTTG	1																												1
AAGGCC/CCTTGG	1																												1
AAGGGC/CCCTTG		1																											1
AAGGGG/CCCCTT	1																												1
AAGTGC/ACTTGC	1																												1
AATCCC/ATTGGG	1																												1
ACCACT/AGTGGT			1																										1
ACCAGC/CTGGTG	1																												1
ACCGCC/CGGTGG	1																												1
ACCGGC/CCGGTG	1																												1
ACCTGC/AGGTGC			1																										1
ACCTGG/AGGTCC	1																												1
ACGATC/ATCGTG								1																					1
AGAGGC/CCTCTG	1																												1
AGCAGG/CCTGCT																												1	1
AGCCCC/CTGGGG	1																												1
AGCCTG/AGGCTC				1																									1
AGCGCC/CGCTGG	2																												2
AGCTCC/AGCTGG								1																					1
AGGCCC/CCTGGG	3																												3
AGGGCC/CCCTGG	4																												4
CCCGGG/CCCGGG	1																												1
