Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-85/megassr/results/hub_GCF_050446525.1/fasta/hub_GCF_050446525.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              44
Total size of examined sequences (bp):           4032077
Total number of identified SSRs:                 15
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	3
4	3
5	2
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CGG	-	-	1						1
TGG	-	-	1						1
TTC	-	-	1						1
ATAG	-			1					1
TCAT	-						1		1
TTTA	-							1	1
GTGAA	1								1
TGGAA	1								1
AAAACC		1							1
AAGTTA	1								1
CAAAAG			1						1
CCTGGA	1								1
TGAAAT	1								1
TGTTTA		1							1
TTGAAG	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AAG/CTT	-	-	1						1
ACC/GGT	-	-	1						1
CCG/CGG	-	-	1						1
AAAT/ATTT	-							1	1
AATG/ATTC	-						1		1
AGAT/ATCT	-			1					1
AAGTG/ACTTC	1								1
AATGG/ATTCC	1								1
AAAACC/GGTTTT		1							1
AAAAGC/CTTTTG			1						1
AAACAT/ATGTTT		1							1
AAAGTT/AACTTT	1								1
AAATTG/AATTTC	1								1
AACTTC/AAGTTG	1								1
ACCTGG/AGGTCC	1								1
