Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-84/megassr/results/hub_GCF_050446505.1/fasta/hub_GCF_050446505.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              42
Total size of examined sequences (bp):           4624568
Total number of identified SSRs:                 19
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	4
5	10
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
AAT	-	-	1															1
ACC	-	-	1															1
CAC	-	-			1													1
TAT	-	-	1															1
AAAAC	1																	1
AAATA	1																	1
AATTA		1																1
AATTT	1																	1
ATATA	1																	1
ATTAA	1																	1
CCTAC	1																	1
GCTTG	1																	1
GTTGG	1																	1
TTTAA	1																	1
AAGCAG	1																	1
CTTCAA	1																	1
GTGTTG																	1	1
TCTACA	1																	1
TTCCCG	1																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
AAT/ATT	-	-	2															2
ACC/GGT	-	-	1		1													2
AAAAC/GTTTT	1																	1
AAAAT/ATTTT	1																	1
AAATT/AATTT	3	1																4
AACCC/GGGTT	1																	1
AAGCC/CTTGG	1																	1
AATAT/ATATT	1																	1
ACCCT/AGGGT	1																	1
AACACC/GGTGTT																	1	1
AACGGG/CCCGTT	1																	1
AACTTC/AAGTTG	1																	1
AAGCAG/CTGCTT	1																	1
ACATCT/AGATGT	1																	1
