Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-113/megassr/results/hub_GCF_050378735.1/fasta/hub_GCF_050378735.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              53
Total size of examined sequences (bp):           5066848
Total number of identified SSRs:                 15
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	3
5	3
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AT	-	-	-	1											1
CG	-	-	-			1									1
CAG	-	-	1												1
CGG	-	-	1												1
CTG	-	-	1												1
ACAGT	1														1
GAAGG														1	1
GCGTG												1			1
AGGGTT		1													1
ATCTGT			1												1
CATGAC					1										1
CTGGTT	1														1
GAAGTC	1														1
GCGCCA	1														1
TGCATA	1														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AT/AT	-	-	-	1											1
CG/CG	-	-	-			1									1
AGC/CTG	-	-	2												2
CCG/CGG	-	-	1												1
AAGGG/CCCTT														1	1
ACAGT/ACTGT	1														1
ACGCC/CGTGG												1			1
AACCAG/CTGGTT	1														1
AACCCT/AGGGTT		1													1
AAGTCG/ACTTCG	1														1
ACAGAT/ATCTGT			1												1
ACCATG/ATGGTC					1										1
AGCGCC/CGCTGG	1														1
ATATGC/ATATGC	1														1
