Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-133/megassr/results/hub_GCF_050378715.1/fasta/hub_GCF_050378715.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              44
Total size of examined sequences (bp):           5270195
Total number of identified SSRs:                 44
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	9
3	18
4	1
5	6
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	4	2	6
GC	-	-	-	3		3
CAG	-	-	1			1
CCG	-	-	1			1
CGC	-	-		2		2
CGG	-	-	4			4
CGT	-	-	1			1
CTG	-	-	1			1
GCA	-	-	1			1
GCC	-	-	1			1
GCG	-	-	1	1		2
GCT	-	-	1	1		2
GGC	-	-	1			1
TCG	-	-	1			1
GCGT	-	1				1
CGCGG	2					2
CGGGC	1					1
GCGCC	1					1
GCGGC	1					1
TTATT	1					1
AGCATC	1					1
CAGCGC	1					1
CCGGAG		1				1
CGACTT	1					1
CTTTGC	1					1
GACGAA	1					1
GCCTGG	1					1
GCTGGC	1					1
GGCGCC	1					1
TTCCAC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	7	2	9
ACG/CGT	-	-	2			2
AGC/CTG	-	-	4	1		5
CCG/CGG	-	-	8	3		11
ACGC/CGTG	-	1				1
AAAAT/ATTTT	1					1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	4					4
AAAGGC/CCTTTG	1					1
AAGACG/CGTCTT	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
AGCATC/ATGCTG	1					1
AGCCGG/CCGGCT		1				1
AGCGCC/CGCTGG	2					2
AGGCCC/CCTGGG	1					1
CCGGCG/CCGGCG	1					1
