Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-131/megassr/results/hub_GCF_050378675.1/fasta/hub_GCF_050378675.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              96
Total size of examined sequences (bp):           5287985
Total number of identified SSRs:                 50
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  12
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	11
3	20
4	1
5	7
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																																												2	2
AT	-	-	-	1			1																																																																																																							2
CG	-	-	-	3	2																																																																																																									5
GC	-	-	-	4																																																																																																										4
AGC	-	-		1																																																																																																										1
CAG	-	-	1																																																																																																											1
CCG	-	-	2																																																																																																											2
CGC	-	-					1																																																																																																							1
CGG	-	-	2																																																																																																											2
CTG	-	-	2																																																																																																											2
GCA	-	-	1																																																																																																											1
GCC	-	-	1																																																																																																											1
GCG	-	-	1	1																																																																																																										2
GCT	-	-	1																																																																																																											1
GGC	-	-	2	1																																																																																																										3
GGT	-	-	1																																																																																																											1
TCA	-	-	1																																																																																																											1
TCG	-	-	1																																																																																																											1
CCGA	-						1																																																																																																							1
ATTAG	1																																																																																																													1
CCGCG	1																																																																																																													1
CGCCG	1																																																																																																													1
CGCGC	1																																																																																																													1
CGGGC	1																																																																																																													1
GCGCC	1																																																																																																													1
GGAAG	1																																																																																																													1
CAGCGC	1																																																																																																													1
CCGGAG		1																																																																																																												1
CTGGTG	1																																																																																																													1
GAAGTC	1																																																																																																													1
GCCTGG	1																																																																																																													1
GCGAGG	1																																																																																																													1
GGCGCC	1																																																																																																													1
TCTTCG	1																																																																																																													1
TTCCAC	1																																																																																																													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																																												2	2
AT/AT	-	-	-	1			1																																																																																																							2
CG/CG	-	-	-	7	2																																																																																																									9
ACC/GGT	-	-	1																																																																																																											1
ACG/CGT	-	-	1																																																																																																											1
AGC/CTG	-	-	5	1																																																																																																										6
ATC/ATG	-	-	1																																																																																																											1
CCG/CGG	-	-	8	2			1																																																																																																							11
ACCG/CGGT	-						1																																																																																																							1
AAGGG/CCCTT	1																																																																																																													1
AATCT/AGATT	1																																																																																																													1
CCCGG/CCGGG	1																																																																																																													1
CCGCG/CGCGG	4																																																																																																													4
AAGACG/CGTCTT	1																																																																																																													1
AAGTCG/ACTTCG	1																																																																																																													1
AAGTGG/ACTTCC	1																																																																																																													1
ACCAGC/CTGGTG	1																																																																																																													1
AGCCGG/CCGGCT		1																																																																																																												1
AGCGCC/CGCTGG	1																																																																																																													1
AGGCCC/CCTGGG	1																																																																																																													1
AGGGCG/CCCTCG	1																																																																																																													1
CCGGCG/CCGGCG	1																																																																																																													1
