Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-130/megassr/results/hub_GCF_050378655.1/fasta/hub_GCF_050378655.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              51
Total size of examined sequences (bp):           5357234
Total number of identified SSRs:                 44
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	8
3	19
4	1
5	6
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-						1																																																																																						1	2
CG	-	-	-	4	1																																																																																																									5
GC	-	-	-	3																																																																																																										3
CCG	-	-	1																																																																																																											1
CGA	-	-	1																																																																																																											1
CGC	-	-		1																																																																																																										1
CGG	-	-	5	1																																																																																																										6
CTG	-	-	2																																																																																																											2
GCA	-	-	3																																																																																																											3
GCC	-	-	1																																																																																																											1
GCG	-	-	1																																																																																																											1
GGC	-	-	2																																																																																																											2
TCG	-	-	1																																																																																																											1
CCGA	-								1																																																																																																					1
AATCT	1																																																																																																													1
CCTCC	1																																																																																																													1
CGCGC	1																																																																																																													1
CGCGG	1																																																																																																													1
GCCCG	1																																																																																																													1
GGCGC	1																																																																																																													1
CAGCGC	1																																																																																																													1
CCAGGC	1																																																																																																													1
CCCGCT	1																																																																																																													1
GAAGTC	1																																																																																																													1
GACGAA	1																																																																																																													1
GCTCCG		1																																																																																																												1
GGCGCC	1																																																																																																													1
GTGGAA	1																																																																																																													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-						1																																																																																						1	2
CG/CG	-	-	-	7	1																																																																																																									8
ACG/CGT	-	-	2																																																																																																											2
AGC/CTG	-	-	5																																																																																																											5
CCG/CGG	-	-	10	2																																																																																																										12
ACCG/CGGT	-								1																																																																																																					1
AATCT/AGATT	1																																																																																																													1
AGGGG/CCCCT	1																																																																																																													1
CCCGG/CCGGG	1																																																																																																													1
CCGCG/CGCGG	3																																																																																																													3
AAGACG/CGTCTT	1																																																																																																													1
AAGTCG/ACTTCG	1																																																																																																													1
AAGTGG/ACTTCC	1																																																																																																													1
AGCCGG/CCGGCT		1																																																																																																												1
AGCGCC/CGCTGG	1																																																																																																													1
AGCGGG/CCCGCT	1																																																																																																													1
AGGCCC/CCTGGG	1																																																																																																													1
CCGGCG/CCGGCG	1																																																																																																													1
