Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-128/megassr/results/hub_GCF_050378555.1/fasta/hub_GCF_050378555.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              84
Total size of examined sequences (bp):           5324744
Total number of identified SSRs:                 42
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  13
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	8
3	17
4	2
5	4
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																																												2	2
CG	-	-	-	5	1																																																																																																									6
GC	-	-	-	2																																																																																																										2
CAG	-	-	1																																																																																																											1
CCG	-	-	2																																																																																																											2
CGA	-	-	1																																																																																																											1
CGC	-	-	1																																																																																																											1
CGG	-	-	3	1																																																																																																										4
GAC	-	-	1																																																																																																											1
GCA	-	-	3																																																																																																											3
GCC	-	-	2																																																																																																											2
GGC	-	-		1																																																																																																										1
GTG	-	-	1																																																																																																											1
GGTC	-										1																																																																																																			1
TTAC	-	1																																																																																																												1
CGCGG	1																																																																																																													1
CGGGC	1																																																																																																													1
GCGCC	1																																																																																																													1
GGCGC	1																																																																																																													1
AGCGGG	1																																																																																																													1
CCAGGC	1																																																																																																													1
CCCCAT	1																																																																																																													1
CCGGAG			1																																																																																																											1
CTGGTG	1																																																																																																													1
GAAGTC	1																																																																																																													1
GACGAA	1																																																																																																													1
GTTATA	1																																																																																																													1
TTCCAC	1																																																																																																													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																																												2	2
CG/CG	-	-	-	7	1																																																																																																									8
ACC/GGT	-	-	1																																																																																																											1
ACG/CGT	-	-	2																																																																																																											2
AGC/CTG	-	-	4																																																																																																											4
CCG/CGG	-	-	8	2																																																																																																										10
AAGT/ACTT	-	1																																																																																																												1
ACCG/CGGT	-										1																																																																																																			1
CCCGG/CCGGG	1																																																																																																													1
CCGCG/CGCGG	3																																																																																																													3
AACTAT/AGTTAT	1																																																																																																													1
AAGACG/CGTCTT	1																																																																																																													1
AAGTCG/ACTTCG	1																																																																																																													1
AAGTGG/ACTTCC	1																																																																																																													1
ACCAGC/CTGGTG	1																																																																																																													1
AGCCGG/CCGGCT			1																																																																																																											1
AGCGGG/CCCGCT	1																																																																																																													1
AGGCCC/CCTGGG	1																																																																																																													1
ATCCCC/ATGGGG	1																																																																																																													1
