Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-105/megassr/results/hub_GCF_049889015.1/fasta/hub_GCF_049889015.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              46
Total size of examined sequences (bp):           2384558
Total number of identified SSRs:                 8
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
5	5
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CA	-	-	-	1	1
ATTTG	1				1
CTAAA	1				1
GTTAA	1				1
TATTA	1				1
TTACG	1				1
CGGACA				1	1
TGCTTC		1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AC/GT	-	-	-	1	1
AAACT/AGTTT	1				1
AAATC/ATTTG	1				1
AACGT/ACGTT	1				1
AACTT/AAGTT	1				1
AATAT/ATATT	1				1
AAGCAG/CTGCTT		1			1
ACACGG/CCGTGT				1	1
