Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-83/megassr/results/hub_GCF_048847255.1/fasta/hub_GCF_048847255.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              37
Total size of examined sequences (bp):           5694417
Total number of identified SSRs:                 44
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  13
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	5
2	5
3	1
4	1
5	7
6	25

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1							1			2
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1											2	3
CG	-	-	-	2																												2
GC	-	-	-	2																												2
TG	-	-	-		1																											1
GGC	-	-		1																												1
GCCA	-	1																														1
AACTG					1																											1
CCAAC	1																															1
CTTGA	1																															1
GACGC	1																															1
GCCGC	2																															2
GCGCG	1																															1
AAGATC	1																															1
AAGCAC	1																															1
ACTTGT	1																															1
AGCAAC																			1													1
AGGGCG	1																															1
CAAGAT					1																											1
CAAGCA	1																															1
CCACCG	1																															1
CCACGG	1																															1
CCAGCC	1																															1
CCGGCT	1																															1
CGCCAC	2																															2
CGCGGG	1																															1
CGGCGT	1																															1
GAAATT	1																															1
GCCAGC	1																															1
GCCCGC	1																															1
GCTAAT	1																															1
GCTTTT		1																														1
GGCCAT	1																															1
GGCGCT	1																															1
TCGCCG	1																															1
TGTTCC	1																															1
TTGGAT	1																															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1		1							1		2	5
AC/GT	-	-	-		1																											1
CG/CG	-	-	-	4																												4
CCG/CGG	-	-		1																												1
AGCC/CTGG	-	1																														1
AACCC/GGGTT	1																															1
AACTG/AGTTC					1																											1
AAGTC/ACTTG	1																															1
ACGCG/CGCGT	1																															1
CCGCG/CGCGG	3																															3
AAAAGC/CTTTTG		1																														1
AAATCC/ATTTGG	1																															1
AAATTG/AATTTC	1																															1
AACAGC/CTGTTG																			1													1
AACAGG/CCTGTT	1																															1
AAGATC/ATCTTG	1				1																											2
AAGCAC/CTTGTG	2																															2
AAGTAC/ACTTGT	1																															1
AATGCT/AGCATT	1																															1
ACCGCC/CGGTGG	3																															3
ACGCCG/CGGCGT	1																															1
ACGGCC/CCGTGG	1																															1
ACGGCG/CCGTCG	1																															1
AGCCCC/CTGGGG	1																															1
AGCCGG/CCGGCT	1																															1
AGCGCC/CGCTGG	2																															2
AGGGCG/CCCTCG	1																															1
ATGGCC/ATGGCC	1																															1
CCCGCG/CGCGGG	2																															2
