Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-93/megassr/results/hub_GCF_048568395.1/fasta/hub_GCF_048568395.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           6937647
Total number of identified SSRs:                 35
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	5
5	7
6	22

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	1							1
CAC	-	-	1								1
CCG	-	-	1								1
GCC	-	-	2								2
GGC	-	-		1							1
CCCAG	1										1
CGCCG	2										2
CGCGG	1										1
GGCCG	1										1
GGTTT	1										1
TTTTA	1										1
AGAGCA										1	1
AGCAAG	1										1
CAAAAG	1										1
CAAGGC	1										1
CAGGAA	1										1
CCGGCT				1							1
CCTGGG	1										1
CGCTGG	1										1
CGGTGC	1										1
CTCGGC	1										1
CTGCAC			1								1
CTGGCA	1										1
CTGGCC	1										1
CTGGGC	1										1
CTGGGG	1										1
CTGGTG	1										1
GACCAG	1										1
GCCGAA	1										1
GGCAAC		1									1
GGCCAT	1										1
GGCTTG	1										1
TTGCCC	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG/CG	-	-	-	1							1
ACC/GGT	-	-	1								1
CCG/CGG	-	-	3	1							4
AAAAT/ATTTT	1										1
AAACC/GGTTT	1										1
AGCCC/CTGGG	1										1
CCCGG/CCGGG	1										1
CCGCG/CGCGG	3										3
AAAAGC/CTTTTG	1										1
AACAGG/CCTGTT	1										1
AACGGC/CCGTTG		1									1
AAGAGC/CTCTTG	1									1	2
AAGCCC/CTTGGG	1										1
AAGCCG/CGGCTT	1										1
AAGGCC/CCTTGG	1										1
AAGGGC/CCCTTG	1										1
ACCAGC/CTGGTG	1										1
ACCAGG/CCTGGT	1										1
ACCGGC/CCGGTG	1										1
ACCTGC/AGGTGC			1								1
ACTGGC/AGTGCC	1										1
AGCCCC/CTGGGG	1										1
AGCCGG/CCGGCT				1							1
AGCGCC/CGCTGG	1										1
AGGCCC/CCTGGG	2										2
AGGCCG/CCTCGG	1										1
AGGGCC/CCCTGG	1										1
ATGGCC/ATGGCC	1										1
