Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-91/megassr/results/hub_GCF_047501685.1/fasta/hub_GCF_047501685.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              60
Total size of examined sequences (bp):           5842465
Total number of identified SSRs:                 69
Number of SSR containing sequences:              24
Number of sequences containing more than 1 SSR:  12
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	9
4	1
5	5
6	54

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
CAC	-	-	2																	2
CAG	-	-	1																	1
CGC	-	-	2																	2
GCG	-	-	2																	2
GGC	-	-	1																	1
TTG	-	-			1															1
GCGG	-				1															1
CGCCG	2																			2
GCCCA		1																		1
GCCGC	1																			1
GGCGC	1																			1
AAAGTC	1			1	1															3
AAAGTT	1																			1
AACGGC											1									1
AAGTCA								1		1			1						1	4
ACCAAG		1																		1
AGAGCG			1																	1
AGATCA	1																			1
ATCAAG	1																			1
CAACGG						1														1
CAAGAG					1															1
CAGCAC	1																			1
CAGGAA	1																			1
CAGGCC	1																			1
CCAGGC	1																			1
CCCAGG	1																			1
CCCGAA							1													1
CCTGGC	2																			2
CGAACC	1																			1
CGAAGA	1																			1
CGGCAA				1	1			1				1								4
CTCTTG					1															1
CTTGCC			1																	1
CTTGCT	1																			1
CTTTTG						1														1
GAAGCC					1															1
GAGCCA	1																			1
GATCTT							1													1
GCCGTT					1															1
GCCTGT	1																			1
GCTCTT			1																	1
GGCAAC		1																		1
GGCCAT	1																			1
GGGGTC						1														1
GGTCAA	1																			1
GGTGGC		1																		1
TCCTGA								1												1
TCTTGC		2	1																	3
TCTTGT					1															1
TGCCCT							1													1
TGCCGC	1																			1
TGGCTC		1																		1
TTGACT				1	1															2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
AAC/GTT	-	-			1															1
ACC/GGT	-	-	2																	2
AGC/CTG	-	-	1																	1
CCG/CGG	-	-	5																	5
CCCG/CGGG	-				1															1
AGCCC/CTGGG		1																		1
CCGCG/CGCGG	4																			4
AAAAGC/CTTTTG						1														1
AAAGTC/ACTTTG	1			2	2			1		1			1						1	9
AAAGTT/AACTTT	1																			1
AACAAG/CTTGTT					1															1
AACAGG/CCTGTT	1																			1
AACCCG/CGGGTT	1						1													2
AACGGC/CCGTTG		1		1	2	1		1			1	1								8
AAGACC/CTTGGT		1																		1
AAGACG/CGTCTT	1																			1
AAGAGC/CTCTTG	1	2	2		2															7
AAGATC/ATCTTG	2						1													3
AAGCCG/CGGCTT					1															1
AAGGGC/CCCTTG			1				1													2
AAGGTC/ACCTTG	1																			1
ACAGGC/CCTGTG	1																			1
ACCAGC/CTGGTG	1																			1
ACCCCG/CGGGGT						1														1
ACCGCC/CGGTGG		1																		1
AGAGCC/CTCTGG	1	1																		2
AGAGCG/CGCTCT			1																	1
AGCGGC/CCGCTG	1																			1
AGGATC/ATCCTG								1												1
AGGCCC/CCTGGG	3																			3
AGGGCC/CCCTGG	2																			2
ATGGCC/ATGGCC	1																			1
