Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-90/megassr/results/hub_GCF_047468875.1/fasta/hub_GCF_047468875.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              282
Total size of examined sequences (bp):           5801677
Total number of identified SSRs:                 75
Number of SSR containing sequences:              37
Number of sequences containing more than 1 SSR:  19
Number of SSRs present in compound formation:    10


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	40
2	5
3	1
5	10
6	19

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	2	2	2	1	1	1		1	1	1																					1																		15
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	1	4	1	1	4	1	1	2		2				1	1		1	1																															1	25
CG	-	-	-		1																																																															1
GC	-	-	-	4																																																																4
CTA	-	-					1																																																													1
CAGGC	1																																																																			1
CCAAT				1																																																																1
CCCGC	1																																																																			1
CCGCC	1																																																																			1
CGTGC	1																																																																			1
GCGCC	1																																																																			1
GCGCT	1																																																																			1
GCGGC	1																																																																			1
TGCCT		1																																																																		1
TTAAA	1																																																																			1
ACGCCA				1																																																																1
AGCAGG			1																																																																	1
ATGGCC	1																																																																			1
CAGCGC	1																																																																			1
CAGCTC	1																																																																			1
CCAGGG	1																																																																			1
CCTGGG	1																																																																			1
CGCCCC	1																																																																			1
CTGCAC									1																																																											1
GCACCG	1																																																																			1
GCACCT						1																																																														1
GCAGCG	1																																																																			1
GCTGCA	1																																																																			1
GGCCAG	1																																																																			1
GGCCTG	1																																																																			1
TCGTGA		1																																																																		1
TGGCTC			1																																																																	1
TGGTGC	1																																																																			1
TTCCAC	1																																																																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	2	6	3	3	5	2	2	2	1	3	1			1	1		1	1														1																	1	40
CG/CG	-	-	-	4	1																																																															5
ACT/AGT	-	-					1																																																													1
AAATT/AATTT	1																																																																			1
AAGGC/CCTTG		1																																																																		1
AATCC/ATTGG				1																																																																1
ACGGC/CCGTG	1																																																																			1
AGCGC/CGCTG	1																																																																			1
AGGCC/CCTGG	1																																																																			1
CCCCG/CGGGG	2																																																																			2
CCGCG/CGCGG	2																																																																			2
AACGCC/CGTTGG				1																																																																1
AAGTGG/ACTTCC	1																																																																			1
ACCAGC/CTGGTG	1																																																																			1
ACCGGC/CCGGTG	1																																																																			1
ACCTGC/AGGTGC						1			1																																																											2
ACGATC/ATCGTG		1																																																																		1
AGAGCC/CTCTGG			1																																																																	1
AGCAGG/CCTGCT			1																																																																	1
AGCGCC/CGCTGG	1																																																																			1
AGCGGC/CCGCTG	1																																																																			1
AGCTCC/AGCTGG	1																																																																			1
AGCTGC/AGCTGC	1																																																																			1
AGGCCC/CCTGGG	2																																																																			2
AGGGCC/CCCTGG	2																																																																			2
ATGGCC/ATGGCC	1																																																																			1
CCCCCG/CGGGGG	1																																																																			1
