Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-111/megassr/results/hub_GCF_046720095.1/fasta/hub_GCF_046720095.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              127
Total size of examined sequences (bp):           5015002
Total number of identified SSRs:                 26
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	7
3	5
4	1
5	4
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																										1	1
CG	-	-	-	2																																																																								2
GC	-	-	-	5																																																																								5
AGC	-	-	1																																																																									1
CAG	-	-	1																																																																									1
CCG	-	-	1																																																																									1
GCG	-	-	1																																																																									1
TGC	-	-	1																																																																									1
ATTT	-	1																																																																										1
ACGGC	1																																																																											1
CGCGC	1																																																																											1
GCTGC	1																																																																											1
TGTTG	1																																																																											1
CACGAG					1																																																																							1
CGACTT	1																																																																											1
GAAGAT	1																																																																											1
GCTGGC	1																																																																											1
GGTGAA	1																																																																											1
TCCTGT											1																																																																	1
TGCTGG										1																																																																		1
TGGCGA	1																																																																											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																										1	1
CG/CG	-	-	-	7																																																																								7
AGC/CTG	-	-	3																																																																									3
CCG/CGG	-	-	2																																																																									2
AAAT/ATTT	-	1																																																																										1
AACAC/GTGTT	1																																																																											1
ACGGC/CCGTG	1																																																																											1
AGCGC/CGCTG	1																																																																											1
CCGCG/CGCGG	1																																																																											1
AACAGG/CCTGTT											1																																																																	1
AAGATG/ATCTTC	1																																																																											1
AAGGTG/ACCTTC	1																																																																											1
AAGTCG/ACTTCG	1																																																																											1
ACCAGC/CTGGTG										1																																																																		1
ACGAGC/CGTGCT					1																																																																							1
AGCGCC/CGCTGG	1																																																																											1
ATCGCC/ATGGCG	1																																																																											1
