Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-110/megassr/results/hub_GCF_046719925.1/fasta/hub_GCF_046719925.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              121
Total size of examined sequences (bp):           4675098
Total number of identified SSRs:                 23
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	7
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	1		1
GC	-	-	-	3	1	4
CAC	-	-	1			1
CCG	-	-	1			1
CGG	-	-	2			2
CTG	-	-	1			1
GCA	-	-	1			1
TGC	-	-	1			1
CGCGC	2					2
CGTCG	1					1
GCGCC	1					1
CATGAC		1				1
CCAGCG	1					1
CCATCG	1					1
CGACTT	1					1
GCTGGC	2					2
TTTCAG	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	4	1	5
ACC/GGT	-	-	1			1
AGC/CTG	-	-	3			3
CCG/CGG	-	-	3			3
ACGCG/CGCGT	1					1
CCGCG/CGCGG	3					3
AAACTG/AGTTTC	1					1
AAGTCG/ACTTCG	1					1
ACCATG/ATGGTC		1				1
AGCGCC/CGCTGG	3					3
ATCGCC/ATGGCG	1					1
