Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-122/megassr/results/hub_GCF_046719885.1/fasta/hub_GCF_046719885.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              198
Total size of examined sequences (bp):           5489807
Total number of identified SSRs:                 43
Number of SSR containing sequences:              29
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	4
3	19
5	5
6	14

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1	1
CG	-	-	-	2	1																		3
GC	-	-	-	1																			1
CAG	-	-	2							1													3
CCA	-	-	1																				1
CCG	-	-	2																				2
CGC	-	-	1																				1
CGG	-	-	3																				3
GAC	-	-	1																				1
GCA	-	-	3																				3
GCC	-	-	2																				2
GCG	-	-	1																				1
GGC	-	-		1																			1
TCG	-	-	1																				1
AATAA	1																						1
CCGCG	1																						1
CGTGG	1																						1
GCCGG	1																						1
GCGCC	1																						1
CACCAG	1																						1
CCGGAG		1																					1
CGACTC	3																						3
CGACTT	1																						1
GAGTCG	2																						2
GATACC	1																						1
GGGGCT	1																						1
GTCGGA	1																						1
TCGGCG	1																						1
TCTTCG	1																						1
TGCTGG									1														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1	1
CG/CG	-	-	-	3	1																		4
ACC/GGT	-	-	1																				1
ACG/CGT	-	-	2																				2
AGC/CTG	-	-	5							1													6
CCG/CGG	-	-	9	1																			10
AAAAT/ATTTT	1																						1
ACGCC/CGTGG	1																						1
CCCGG/CCGGG	1																						1
CCGCG/CGCGG	2																						2
AAGACG/CGTCTT	1																						1
AAGTCG/ACTTCG	1																						1
ACCAGC/CTGGTG	1								1														2
ACCGAT/ATCGGT	1																						1
ACGCCG/CGGCGT	1																						1
ACTCCG/AGTCGG	6																						6
AGCCCC/CTGGGG	1																						1
AGCCGG/CCGGCT		1																					1
