Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-103/megassr/results/hub_GCF_046719875.1/fasta/hub_GCF_046719875.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              76
Total size of examined sequences (bp):           4621317
Total number of identified SSRs:                 29
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	12
3	7
4	1
5	2
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	2	2
CG	-	-	-	5	5
GC	-	-	-	5	5
CAG	-	-		1	1
CCG	-	-	1		1
CGG	-	-	2		2
CTG	-	-	1		1
GCA	-	-	1		1
GCT	-	-	1		1
GCTG	-	1			1
AAATA	1				1
CGCGC	1				1
AAGCGA	1				1
ATCTTC	1				1
GAAGTC	1				1
GCCAGC	1				1
GCGATG	1				1
GCTGGC	1				1
TGTCGC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	2	2
CG/CG	-	-	-	10	10
AGC/CTG	-	-	3	1	4
CCG/CGG	-	-	3		3
AGCC/CTGG	-	1			1
AAAAT/ATTTT	1				1
CCGCG/CGCGG	1				1
AAAGCG/CGCTTT	1				1
AAGATG/ATCTTC	1				1
AAGTCG/ACTTCG	1				1
ACAGCG/CGCTGT	1				1
AGCGCC/CGCTGG	2				2
ATCGCC/ATGGCG	1				1
